JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHAC2_chr2_53762804_53780196	0/0	g0056	1	0	1	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0057	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	1/0	g0058	1	0	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0059	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0060	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0061	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0062	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0063	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0064	1	0	1	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0065	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0066	1	0	0	0	0	1	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0067	1	0	0	0	0	1	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0068	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0069	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0070	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0071	1	0	0	0	0	1	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0072	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0073	1	0	1	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0074	1	0	1	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0075	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0076	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0077	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0078	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0079	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0080	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0081	1	0	0	0	0	1	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0082	1	0	1	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0083	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0084	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0085	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0086	1	0	1	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0087	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0088	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0089	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0090	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0091	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0092	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0093	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0094	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0095	1	0	0	1	0	0	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0096	1	1	0	0	0	0	CHAC2	chr2	53762804	53780196
CHADL_chr22_41224513_41245931	0/0	g0001	28	0	1	24	2	1	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	g0002	24	0	13	4	0	7	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	g0003	17	0	0	17	0	0	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	g0004	9	0	0	9	0	0	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	g0005	8	0	0	8	0	0	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	g0006	7	0	0	7	0	0	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	g0007	7	2	0	1	2	2	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	g0008	7	0	2	1	1	3	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	g0009	7	0	3	1	2	1	CHADL	chr22	41224513	41245931