JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	SAS	genename	chr	start	end
CHAF1A_chr19_4397640_4448397	0/0	g0334	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0335	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0336	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0337	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0338	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0339	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0340	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0341	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0342	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0343	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0344	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0345	1	0	0	1	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0346	1	0	0	1	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0347	1	0	0	1	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0348	1	0	0	0	1	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0349	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0350	1	0	0	1	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0351	1	0	0	1	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0352	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0353	1	0	0	1	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0354	1	0	0	1	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0355	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0356	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0357	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0358	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0359	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0360	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0361	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0362	1	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0363	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0364	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0365	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0366	1	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0367	1	1	0	0	0	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	g0368	1	0	1	0	0	CHAF1A	chr19	4397640	4448397
CHAF1B_chr21_36380392_36424015	0/0	g0001	6	0	3	3	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0002	5	0	0	5	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0003	2	2	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0004	2	0	2	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0005	2	0	0	1	1	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0006	2	1	0	1	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0007	2	0	1	0	1	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0008	2	0	0	2	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0009	2	0	0	2	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0010	2	0	0	0	2	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0011	2	2	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0012	1	0	0	0	1	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0013	1	1	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0014	1	1	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0015	1	0	1	0	0	CHAF1B	chr21	36380392	36424015