JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHAF1B_chr21_36380392_36424015	0/0	g0316	1	1	0	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0317	1	1	0	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0318	1	1	0	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0319	1	0	1	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0320	1	0	1	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0321	1	1	0	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0322	1	0	0	0	0	1	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0323	1	0	1	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0324	1	0	1	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0325	1	1	0	0	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0326	1	0	0	1	0	0	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0327	1	0	0	0	0	1	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	g0328	1	1	0	0	0	0	CHAF1B	chr21	36380392	36424015
CHAMP1_chr13_114309503_114332322	0/0	g0001	39	1	6	29	2	1	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0002	29	8	1	18	0	2	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0003	27	2	4	12	3	6	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0004	22	0	1	20	0	1	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	1/0	g0005	21	0	10	8	1	1	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0006	19	11	0	8	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0007	17	1	1	12	0	3	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0008	12	0	0	11	0	1	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/1	g0009	12	5	5	0	0	1	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0010	6	5	1	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0011	5	0	0	5	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0012	4	4	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0013	4	0	0	3	1	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0014	4	0	0	4	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0015	4	0	1	3	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0016	4	0	0	4	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0017	4	2	1	0	0	1	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0018	3	0	3	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0019	3	0	0	3	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0020	3	0	1	0	2	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0021	3	0	2	0	1	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0022	3	3	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0023	3	0	1	2	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0024	3	0	1	1	0	1	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0025	3	0	0	0	0	3	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0026	2	0	2	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0027	2	1	1	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0028	2	0	0	0	0	2	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0029	2	0	0	2	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0030	2	0	0	2	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0031	2	2	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0032	2	2	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0033	2	0	0	2	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0034	2	0	1	1	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0035	2	1	1	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0036	2	0	1	1	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0037	2	1	1	0	0	0	CHAMP1	chr13	114309503	114332322