JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHAMP1_chr13_114309503_114332322	0/0	g0138	1	0	1	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0139	1	0	1	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0140	1	0	1	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0141	1	0	1	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0142	1	0	1	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0143	1	1	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0144	1	0	0	0	0	1	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0145	1	0	0	1	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0146	1	0	0	1	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0147	1	0	1	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0148	1	1	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0149	1	1	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0150	1	1	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0151	1	1	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0152	1	0	1	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0153	1	1	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0154	1	0	0	0	0	1	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0155	1	0	1	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0156	1	1	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	g0157	1	1	0	0	0	0	CHAMP1	chr13	114309503	114332322
CHAT_chr10_49609037_49672942	0/0	g0001	3	0	2	0	1	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0002	3	0	0	3	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0003	3	0	2	0	0	1	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0004	3	0	0	3	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0005	2	2	0	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0006	2	0	1	0	1	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0007	2	0	0	0	1	1	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0008	2	0	2	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0009	2	0	2	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0010	2	0	0	2	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0011	2	0	0	0	2	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0012	2	0	0	2	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0013	2	0	0	2	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0014	2	0	0	2	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0015	2	2	0	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0016	2	0	0	0	2	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0017	2	0	0	2	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0018	2	2	0	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0019	2	1	1	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0020	2	2	0	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0021	2	0	2	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0022	2	2	0	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0023	2	0	2	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0024	2	0	2	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0025	2	0	0	2	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0026	2	0	0	2	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0027	2	0	2	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0028	2	0	1	1	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0029	2	0	0	0	0	2	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0030	2	0	0	1	0	1	CHAT	chr10	49609037	49672942