JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHAT_chr10_49609037_49672942	0/0	g0381	1	0	0	1	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0382	1	0	0	1	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0383	1	1	0	0	0	0	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	g0384	1	1	0	0	0	0	CHAT	chr10	49609037	49672942
CHCHD10_chr22_23760834_23772972	0/1	g0001	102	11	36	37	5	12	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0002	74	0	7	59	3	5	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0003	41	0	6	31	1	3	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0004	24	7	7	7	2	1	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0005	20	4	1	5	2	8	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0006	20	19	1	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0007	18	11	2	2	0	3	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0008	16	0	0	15	0	1	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0009	16	11	4	0	1	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0010	12	3	0	4	0	5	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0011	9	9	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0012	5	0	1	1	0	3	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0013	4	0	3	0	1	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0014	4	0	0	4	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0015	4	3	1	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0016	3	0	0	0	0	3	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0017	3	0	1	0	1	1	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0018	3	0	3	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0019	3	1	0	2	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0020	2	0	2	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0021	2	0	0	2	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0022	2	0	0	2	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0023	2	0	0	2	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0024	2	2	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0025	2	0	1	1	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0026	2	0	0	2	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0027	2	0	2	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0028	2	2	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0029	2	2	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0030	2	2	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0031	2	2	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0032	2	2	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0033	2	2	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0034	1	0	0	1	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0035	1	0	0	1	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0036	1	0	0	1	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0037	1	0	0	1	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0038	1	0	0	0	0	1	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0039	1	0	0	1	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0040	1	0	0	1	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0041	1	1	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0042	1	0	0	1	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0043	1	0	0	1	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0044	1	0	0	1	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0045	1	0	0	0	0	1	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0046	1	1	0	0	0	0	CHCHD10	chr22	23760834	23772972