JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHCHD10_chr22_23760834_23772972	0/0	g0047	1	1	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0048	1	1	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0049	1	0	0	0	0	1	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0050	1	0	1	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0051	1	0	1	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0052	1	0	1	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0053	1	0	1	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0054	1	1	0	0	0	0	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	g0055	1	0	0	1	0	0	CHCHD10	chr22	23760834	23772972
CHCHD1_chr10_73777048_73788652	0/0	g0001	332	79	56	147	12	38	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	g0002	6	3	1	2	0	0	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	g0003	1	0	0	1	0	0	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	g0004	1	0	0	1	0	0	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	g0005	1	0	1	0	0	0	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	g0006	1	0	0	1	0	0	CHCHD1	chr10	73777048	73788652
CHCHD2_chr7_56096573_56111476	0/0	g0001	123	32	21	55	3	12	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/1	g0002	89	15	8	58	0	7	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0003	44	3	3	33	4	1	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	1/0	g0004	34	1	8	7	3	14	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0005	21	2	10	0	4	5	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0006	18	1	2	15	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0007	10	6	2	0	1	1	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0008	9	8	1	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0009	9	9	0	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0010	8	0	8	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0011	6	0	0	5	0	1	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0012	6	0	3	0	2	1	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0013	4	0	0	4	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0014	4	2	1	1	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0015	4	3	0	0	0	1	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0016	4	0	0	4	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0017	3	0	0	3	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0018	3	0	0	3	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0019	3	0	0	3	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0020	3	3	0	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0021	2	0	0	2	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0022	2	1	1	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0023	2	0	0	2	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0024	2	2	0	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0025	1	0	1	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0026	1	1	0	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0027	1	1	0	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0028	1	0	1	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0029	1	1	0	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0030	1	0	0	1	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0031	1	1	0	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0032	1	0	0	1	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0033	1	0	0	1	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0034	1	1	0	0	0	0	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	g0035	1	0	0	1	0	0	CHCHD2	chr7	56096573	56111476