JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHCHD3_chr7_132779870_133087090	0/0	g0283	1	0	0	0	1	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0284	1	1	0	0	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0285	1	0	0	0	0	1	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0286	1	0	1	0	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0287	1	0	0	0	1	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0288	1	0	0	1	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0289	1	1	0	0	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0290	1	1	0	0	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0291	1	1	0	0	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0292	1	0	0	1	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0293	1	0	0	1	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0294	1	0	0	1	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0295	1	0	0	1	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0296	1	0	0	1	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0297	1	0	0	1	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0298	1	0	0	0	0	1	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0299	1	0	0	1	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0300	1	0	0	1	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0301	1	0	1	0	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0302	1	0	0	0	0	1	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0303	1	0	0	0	0	1	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0304	1	0	0	0	1	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0305	1	0	0	0	1	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0306	1	0	1	0	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0307	1	0	0	0	0	1	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0308	1	0	1	0	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0309	1	1	0	0	0	0	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	g0310	1	1	0	0	0	0	CHCHD3	chr7	132779870	133087090
CHCHD4_chr3_14107077_14129870	1/0	g0001	76	5	11	49	1	9	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/1	g0002	72	4	17	41	0	9	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0003	38	0	5	32	0	1	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0004	16	0	1	10	0	5	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0005	14	1	7	0	3	3	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0006	12	0	0	12	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0007	11	8	3	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0008	10	8	0	2	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0009	9	0	6	0	2	1	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0010	8	7	1	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0011	8	0	6	2	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0012	7	0	4	0	2	1	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0013	6	6	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0014	6	1	1	0	1	3	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0015	4	4	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0016	4	1	1	0	2	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0017	4	4	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0018	4	0	0	4	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0019	4	0	0	4	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0020	4	3	1	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0021	4	4	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0022	3	3	0	0	0	0	CHCHD4	chr3	14107077	14129870