JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHCHD4_chr3_14107077_14129870	0/0	g0073	1	1	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0074	1	1	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0075	1	1	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0076	1	1	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0077	1	0	0	0	0	1	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0078	1	0	0	0	0	1	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0079	1	1	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0080	1	0	0	1	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0081	1	1	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0082	1	1	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0083	1	1	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0084	1	1	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0085	1	1	0	0	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0086	1	0	0	1	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0087	1	0	0	1	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0088	1	0	0	1	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0089	1	0	0	1	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0090	1	0	0	1	0	0	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	g0091	1	0	0	1	0	0	CHCHD4	chr3	14107077	14129870
CHCHD5_chr2_112579609_112594040	0/0	g0001	121	22	19	69	3	8	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	1/0	g0002	119	12	19	80	1	6	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/1	g0003	83	5	24	26	8	19	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0004	20	17	1	0	0	2	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0005	16	12	4	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0006	10	0	0	10	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0007	7	0	2	2	2	1	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0008	6	0	4	0	1	1	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0009	5	4	1	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0010	4	4	0	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0011	4	4	0	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0012	4	3	1	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0013	3	0	0	2	0	1	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0014	3	0	0	3	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0015	2	2	0	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0016	2	0	0	2	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0017	2	0	0	2	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0018	2	0	0	2	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0019	2	2	0	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0020	2	2	0	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0021	2	0	0	2	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0022	2	1	1	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0023	2	0	0	2	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0024	2	0	0	1	1	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0025	1	1	0	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0026	1	1	0	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0027	1	0	0	1	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0028	1	1	0	0	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0029	1	0	0	1	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0030	1	0	0	1	0	0	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	g0031	1	1	0	0	0	0	CHCHD5	chr2	112579609	112594040