JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHCHD6_chr3_126699240_126965420	0/1	g0189	1	0	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0190	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0191	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0192	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0193	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0194	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0195	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0196	1	0	1	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0197	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0198	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0199	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0200	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0201	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0202	1	0	1	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0203	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0204	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0205	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0206	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0207	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0208	1	0	0	1	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0209	1	0	0	1	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0210	1	0	0	1	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0211	1	0	1	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0212	1	0	1	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0213	1	0	1	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0214	1	0	1	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0215	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	g0216	1	1	0	0	0	0	CHCHD6	chr3	126699240	126965420
CHCHD7_chr8_56206789_56223809	0/0	g0001	186	31	30	93	7	25	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0002	56	8	11	29	4	4	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	1/0	g0003	36	4	13	12	1	5	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0004	9	0	0	9	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0005	8	4	1	3	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0006	6	6	0	0	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0007	6	6	0	0	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0008	6	5	1	0	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0009	5	5	0	0	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/1	g0010	5	0	4	0	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0011	5	0	0	5	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0012	4	3	1	0	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0013	4	0	1	0	1	2	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0014	3	0	2	0	0	1	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0015	3	0	0	3	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0016	3	0	3	0	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0017	2	2	0	0	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0018	2	2	0	0	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0019	2	0	0	2	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0020	2	0	1	0	1	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0021	2	0	0	2	0	0	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	g0022	2	0	0	0	0	2	CHCHD7	chr8	56206789	56223809