JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHD2_chr15_92895324_93032996	0/0	g0279	1	0	1	0	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0280	1	0	0	0	1	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0281	1	1	0	0	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0282	1	0	1	0	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0283	1	0	0	0	0	1	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0284	1	0	0	0	0	1	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0285	1	0	0	0	0	1	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0286	1	0	0	1	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0287	1	0	1	0	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0288	1	1	0	0	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0289	1	0	0	0	1	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0290	1	1	0	0	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0291	1	0	0	0	0	1	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0292	1	0	1	0	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0293	1	0	0	1	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0294	1	0	0	0	0	1	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0295	1	1	0	0	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0296	1	0	1	0	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0297	1	0	0	0	0	1	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0298	1	1	0	0	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0299	1	1	0	0	0	0	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	g0300	1	1	0	0	0	0	CHD2	chr15	92895324	93032996
CHD3_chr17_7883789_7917755	0/1	g0001	21	0	1	11	2	6	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0002	11	0	1	8	0	2	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0003	8	0	0	8	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0004	7	0	3	0	4	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0005	7	0	1	6	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0006	6	0	4	1	1	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0007	6	0	0	6	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0008	6	6	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0009	6	6	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0010	5	0	3	0	1	1	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0011	5	5	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0012	5	0	0	5	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0013	5	0	4	1	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0014	4	0	0	1	0	3	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	1/0	g0015	4	1	1	0	1	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0016	4	0	1	0	1	2	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0017	4	0	0	4	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0018	4	3	1	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0019	4	0	0	3	1	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0020	4	0	4	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0021	4	0	0	4	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0022	4	3	1	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0023	3	0	1	2	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0024	3	0	2	0	0	1	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0025	3	0	3	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0026	3	2	1	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0027	3	0	3	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0028	3	0	0	3	0	0	CHD3	chr17	7883789	7917755