JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHD3_chr17_7883789_7917755	0/0	g0179	1	0	0	1	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0180	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0181	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0182	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0183	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0184	1	0	1	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0185	1	0	0	1	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0186	1	0	0	1	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0187	1	0	0	1	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0188	1	0	0	1	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0189	1	0	0	0	0	1	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0190	1	0	0	1	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0191	1	0	0	1	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0192	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0193	1	0	1	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0194	1	0	0	1	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0195	1	0	1	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0196	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0197	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0198	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0199	1	0	0	1	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0200	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0201	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0202	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0203	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0204	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0205	1	0	0	0	0	1	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0206	1	0	0	0	0	1	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0207	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0208	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0209	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0210	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0211	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	g0212	1	1	0	0	0	0	CHD3	chr17	7883789	7917755
CHD4_chr12_6565082_6612379	1/0	g0001	18	2	1	12	1	1	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0002	7	0	6	1	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0003	7	0	5	2	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0004	4	4	0	0	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0005	4	0	0	4	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0006	4	0	4	0	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0007	4	2	2	0	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0008	3	3	0	0	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0009	3	3	0	0	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0010	3	0	0	2	0	1	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0011	3	0	0	3	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0012	3	0	0	3	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0013	3	0	0	3	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0014	2	0	0	0	2	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0015	2	2	0	0	0	0	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	g0016	2	2	0	0	0	0	CHD4	chr12	6565082	6612379