JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHDH_chr3_53807335_53851419	0/0	g0323	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0324	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0325	1	0	1	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0326	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0327	1	0	1	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0328	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0329	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0330	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0331	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0332	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0333	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0334	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0335	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0336	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0337	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0338	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0339	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0340	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0341	1	1	0	0	0	0	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	g0342	1	0	1	0	0	0	CHDH	chr3	53807335	53851419
CHEK1_chr11_125620163_125662147	0/0	g0001	25	8	11	3	1	2	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0002	14	0	3	11	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0003	8	0	2	6	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0004	7	0	2	4	0	1	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0005	7	0	1	6	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0006	7	0	0	7	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0007	7	0	0	4	1	2	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0008	6	5	1	0	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0009	5	0	0	5	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0010	5	0	0	5	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0011	5	0	5	0	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0012	4	0	0	3	0	1	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0013	4	4	0	0	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0014	3	2	0	0	1	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0015	3	0	0	3	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0016	3	0	0	0	0	3	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0017	3	0	0	3	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0018	3	3	0	0	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0019	3	0	0	3	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0020	3	0	0	3	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0021	3	0	0	3	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0022	3	0	0	3	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0023	3	0	2	0	1	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0024	2	0	1	0	0	1	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0025	2	0	0	2	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0026	2	0	0	2	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0027	2	1	1	0	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0028	2	2	0	0	0	0	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0029	2	0	1	0	0	1	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	g0030	2	0	1	1	0	0	CHEK1	chr11	125620163	125662147