JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHEK2_chr22_28682743_28746820	0/0	g0334	1	0	0	0	0	1	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0335	1	0	1	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0336	1	0	1	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0337	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0338	1	0	1	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0339	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0340	1	0	1	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0341	1	0	1	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0342	1	0	0	0	0	1	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0343	1	0	0	0	0	1	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0344	1	1	0	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0345	1	0	1	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0346	1	1	0	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0347	1	0	0	0	0	1	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0348	1	0	1	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0349	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0350	1	0	0	0	0	1	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/1	g0351	1	0	0	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0352	1	0	1	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0353	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0354	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0355	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0356	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0357	1	0	0	0	0	1	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0358	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0359	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0360	1	0	1	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0361	1	0	0	0	0	1	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0362	1	1	0	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0363	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0364	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0365	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0366	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0367	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0368	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0369	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0370	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0371	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0372	1	1	0	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0373	1	0	1	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0374	1	0	1	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0375	1	1	0	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0376	1	1	0	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0377	1	1	0	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0378	1	0	0	1	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0379	1	1	0	0	0	0	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	g0380	1	1	0	0	0	0	CHEK2	chr22	28682743	28746820
CHERP_chr19_16512894_16547437	0/0	g0001	20	1	10	3	1	5	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	g0002	12	2	2	4	1	3	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	g0003	10	0	0	9	0	1	CHERP	chr19	16512894	16547437