JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHFR_chr12_132827356_132892605	0/0	g0324	1	1	0	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0325	1	0	0	1	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0326	1	0	1	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0327	1	0	1	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0328	1	0	0	0	0	1	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0329	1	0	0	1	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0330	1	0	0	0	0	1	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0331	1	0	1	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0332	1	0	1	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0333	1	0	1	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0334	1	0	0	0	0	1	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0335	1	0	0	0	0	1	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0336	1	0	0	1	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0337	1	0	0	1	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0338	1	0	0	1	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/1	g0339	1	0	0	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0340	1	0	0	0	1	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0341	1	0	0	0	1	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0342	1	0	1	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0343	1	0	1	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0344	1	0	0	0	0	1	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0345	1	1	0	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0346	1	1	0	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0347	1	1	0	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0348	1	1	0	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0349	1	1	0	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0350	1	1	0	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0351	1	0	0	1	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0352	1	1	0	0	0	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0353	1	0	0	0	0	1	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0354	1	0	0	0	1	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0355	1	0	0	0	1	0	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	g0356	1	0	0	0	1	0	CHFR	chr12	132827356	132892605
CHGA_chr14_92918150_92940285	0/1	g0001	59	7	13	23	2	13	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0002	51	15	5	23	2	6	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0003	44	1	3	33	5	2	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0004	43	0	3	34	0	6	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0005	34	0	11	23	0	0	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0006	30	1	11	12	2	4	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0007	13	0	0	13	0	0	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0008	9	0	8	0	0	1	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0009	7	6	1	0	0	0	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0010	5	5	0	0	0	0	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0011	5	4	1	0	0	0	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0012	5	0	3	0	1	1	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0013	5	0	0	0	4	1	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0014	4	0	3	0	0	1	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0015	4	3	1	0	0	0	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0016	4	4	0	0	0	0	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	g0017	3	3	0	0	0	0	CHGA	chr14	92918150	92940285