JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHGB_chr20_5906510_5930353	0/0	g0166	1	0	1	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0167	1	0	1	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0168	1	0	0	0	1	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0169	1	0	0	1	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/1	g0170	1	0	0	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0171	1	1	0	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0172	1	0	0	0	0	1	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0173	1	0	0	1	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0174	1	0	0	1	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0175	1	0	1	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0176	1	0	1	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0177	1	1	0	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0178	1	0	1	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0179	1	0	0	1	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0180	1	0	0	1	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0181	1	0	0	1	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0182	1	0	0	1	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0183	1	0	1	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0184	1	0	1	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0185	1	0	0	1	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0186	1	0	0	1	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0187	1	0	0	1	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0188	1	1	0	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0189	1	0	1	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0190	1	1	0	0	0	0	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	g0191	1	0	0	0	0	1	CHGB	chr20	5906510	5930353
CHI3L1_chr1_203173931_203191704	0/1	g0001	96	11	19	38	7	20	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0002	50	16	6	23	1	4	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0003	44	3	7	34	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0004	28	1	11	4	3	9	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0005	25	0	0	25	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0006	23	0	3	20	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0007	21	0	16	4	0	1	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0008	14	0	1	12	0	1	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0009	10	10	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0010	10	6	0	4	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0011	9	0	8	0	0	1	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0012	9	9	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0013	7	0	0	7	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0014	7	0	2	5	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0015	6	6	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0016	5	0	0	5	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0017	5	0	0	5	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0018	5	0	2	2	1	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0019	4	4	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0020	4	0	2	2	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0021	4	0	0	4	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0022	3	0	0	3	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0023	3	0	0	0	0	3	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0024	2	0	0	2	0	0	CHI3L1	chr1	203173931	203191704