JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHI3L1_chr1_203173931_203191704	0/0	g0075	1	1	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0076	1	0	0	0	0	1	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0077	1	1	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0078	1	1	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0079	1	0	0	1	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0080	1	1	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0081	1	0	1	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0082	1	0	0	1	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0083	1	0	0	1	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0084	1	1	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0085	1	0	0	1	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0086	1	1	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0087	1	1	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0088	1	1	0	0	0	0	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	g0089	1	0	0	1	0	0	CHI3L1	chr1	203173931	203191704
CHI3L2_chr1_111222713_111248440	0/0	g0001	64	2	11	48	1	2	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0002	57	2	18	32	1	4	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/1	g0003	23	3	6	8	1	4	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0004	20	1	5	14	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0005	15	0	7	6	1	1	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0006	13	6	1	6	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0007	12	0	0	12	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0008	10	0	0	9	0	1	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0009	9	1	1	0	3	4	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0010	8	8	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0011	7	0	2	1	0	4	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0012	6	3	1	0	0	2	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0013	6	6	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0014	5	0	0	4	0	1	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0015	5	5	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0016	4	4	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0017	3	0	0	3	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0018	3	3	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0019	3	0	0	3	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0020	3	0	0	3	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0021	3	3	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0022	3	0	0	3	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0023	3	3	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0024	2	2	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0025	2	2	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0026	2	0	0	0	0	2	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0027	2	0	0	2	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0028	2	0	0	2	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0029	2	0	1	0	0	1	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0030	2	0	1	0	1	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0031	2	0	0	2	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0032	2	0	0	0	1	1	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0033	2	2	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0034	2	1	1	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0035	2	1	1	0	0	0	CHI3L2	chr1	111222713	111248440