JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHI3L2_chr1_111222713_111248440	0/0	g0136	1	0	1	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	1/0	g0137	1	0	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0138	1	0	0	1	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0139	1	0	0	1	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0140	1	0	0	0	0	1	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0141	1	0	0	1	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0142	1	0	0	0	1	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0143	1	0	1	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0144	1	0	1	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0145	1	0	0	1	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0146	1	0	0	1	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0147	1	0	0	1	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0148	1	1	0	0	0	0	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	g0149	1	0	0	1	0	0	CHI3L2	chr1	111222713	111248440
CHIA_chr1_111285851_111325563	0/0	g0001	21	0	2	16	0	3	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0002	15	0	0	15	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0003	10	0	6	4	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0004	9	0	0	9	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0005	9	0	0	9	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0006	9	0	4	5	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0007	7	0	1	4	0	2	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0008	6	6	0	0	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0009	5	0	1	3	1	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0010	5	0	0	5	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0011	5	0	0	5	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0012	4	0	0	4	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0013	4	4	0	0	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0014	4	4	0	0	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0015	4	4	0	0	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0016	4	4	0	0	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0017	4	1	3	0	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0018	4	1	2	1	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0019	3	0	2	0	1	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0020	3	0	0	3	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0021	3	0	0	0	2	1	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0022	3	0	0	0	0	3	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0023	3	0	0	3	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0024	3	0	0	3	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0025	3	0	0	3	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0026	2	0	0	0	0	2	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0027	2	0	0	2	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0028	2	0	0	2	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0029	2	2	0	0	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0030	2	2	0	0	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0031	2	2	0	0	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0032	2	0	2	0	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0033	2	0	0	2	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0034	2	2	0	0	0	0	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0035	2	1	0	0	0	1	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	g0036	2	2	0	0	0	0	CHIA	chr1	111285851	111325563