JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHID1_chr11_862859_915810	0/0	g0295	1	1	0	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0296	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0297	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0298	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0299	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0300	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0301	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0302	1	1	0	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0303	1	1	0	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0304	1	0	1	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0305	1	0	1	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0306	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0307	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0308	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0309	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0310	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0311	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0312	1	1	0	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0313	1	0	1	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0314	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0315	1	0	0	0	1	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0316	1	0	0	0	0	1	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0317	1	0	1	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0318	1	1	0	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0319	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0320	1	0	1	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0321	1	0	1	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0322	1	1	0	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0323	1	1	0	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0324	1	0	1	0	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0325	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0326	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0327	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0328	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0329	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	g0330	1	0	0	1	0	0	CHID1	chr11	862859	915810
CHIT1_chr1_203211079_203234673	1/0	g0001	40	10	11	5	4	9	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0002	35	0	4	15	1	15	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0003	34	6	3	25	0	0	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0004	33	0	16	17	0	0	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0005	27	6	6	11	0	4	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0006	26	1	1	22	0	2	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0007	17	0	2	15	0	0	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/1	g0008	13	0	11	0	1	0	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0009	10	9	1	0	0	0	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0010	9	0	0	9	0	0	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0011	9	0	0	9	0	0	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0012	8	0	0	7	0	1	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0013	6	0	0	6	0	0	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	g0014	5	0	0	5	0	0	CHIT1	chr1	203211079	203234673