JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHKA_chr11_68047859_68126388	0/0	g0259	1	0	0	1	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0260	1	1	0	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0261	1	1	0	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0262	1	0	1	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0263	1	0	1	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0264	1	0	0	1	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0265	1	0	0	1	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0266	1	0	0	1	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0267	1	1	0	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0268	1	1	0	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0269	1	1	0	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0270	1	1	0	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0271	1	1	0	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0272	1	1	0	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0273	1	1	0	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0274	1	1	0	0	0	0	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	g0275	1	1	0	0	0	0	CHKA	chr11	68047859	68126388
CHKB_chr22_50573963_50587849	0/1	g0001	129	11	29	65	9	14	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0002	60	0	9	41	0	10	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	1/0	g0003	53	19	14	8	2	9	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0004	40	0	7	29	1	3	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0005	34	8	2	23	0	1	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0006	19	10	0	2	1	6	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0007	11	11	0	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0008	8	6	2	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0009	6	6	0	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0010	6	6	0	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0011	5	5	0	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0012	5	4	1	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0013	4	4	0	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0014	3	0	0	2	0	1	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0015	3	3	0	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0016	2	0	0	2	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0017	2	1	1	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0018	2	2	0	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0019	2	0	0	2	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0020	2	0	0	0	2	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0021	2	0	2	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0022	1	0	0	1	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0023	1	0	0	1	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0024	1	0	0	1	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0025	1	0	0	1	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0026	1	1	0	0	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0027	1	0	0	1	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0028	1	0	0	0	0	1	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0029	1	0	0	0	1	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0030	1	0	0	0	0	1	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0031	1	0	0	1	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0032	1	0	0	1	0	0	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	g0033	1	0	0	1	0	0	CHKB	chr22	50573963	50587849