JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHL1_chr3_191763_414417	0/0	g0245	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0246	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0247	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0248	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0249	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0250	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0251	1	0	0	0	0	1	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0252	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0253	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0254	1	0	0	0	0	1	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0255	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0256	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0257	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0258	1	0	0	0	0	1	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0259	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0260	1	0	0	0	0	1	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0261	1	0	0	0	0	1	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0262	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0263	1	0	0	1	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0264	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0265	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0266	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0267	1	0	0	0	0	1	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0268	1	0	0	0	1	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0269	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0270	1	0	0	0	0	1	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0271	1	0	0	0	0	1	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0272	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0273	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0274	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0275	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0276	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0277	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0278	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0279	1	0	0	1	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0280	1	0	0	1	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0281	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0282	1	0	0	0	0	1	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0283	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0284	1	0	1	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0285	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0286	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0287	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0288	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0289	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	g0290	1	1	0	0	0	0	CHL1	chr3	191763	414417
CHML_chr1_241623851_241645369	0/0	g0001	54	0	1	52	0	1	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	g0002	53	2	16	27	1	7	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	g0003	52	7	10	30	1	4	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/1	g0004	50	4	7	26	2	10	CHML	chr1	241623851	241645369