JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHMP1A_chr16_89639435_89662708	0/0	g0352	1	1	0	0	0	0	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	g0353	1	1	0	0	0	0	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	g0354	1	0	0	0	1	0	CHMP1A	chr16	89639435	89662708
CHMP1B_chr18_11846413_11859444	1/1	g0000	438	100	76	198	16	46	CHMP1B	chr18	11846413	11859444
CHMP2A_chr19_58546566_58560105	0/1	g0001	89	7	14	55	6	6	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0002	83	12	8	58	2	3	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0003	75	35	9	24	2	5	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	1/0	g0004	74	4	16	37	4	12	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0005	35	7	10	9	1	8	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0006	6	3	1	1	0	1	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0007	6	0	1	5	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0008	5	4	1	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0009	5	5	0	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0010	5	1	3	1	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0011	4	4	0	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0012	3	3	0	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0013	3	0	1	0	2	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0014	2	2	0	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0015	2	0	0	0	0	2	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0016	2	2	0	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0017	2	2	0	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0018	2	1	1	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0019	2	0	1	0	1	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0020	2	0	0	2	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0021	1	1	0	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0022	1	1	0	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0023	1	0	1	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0024	1	0	1	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0025	1	0	1	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0026	1	0	1	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0027	1	0	0	0	0	1	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0028	1	0	0	1	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0029	1	1	0	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0030	1	1	0	0	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0031	1	0	0	1	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0032	1	0	0	1	0	0	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	g0033	1	0	0	1	0	0	CHMP2A	chr19	58546566	58560105
CHMP2B_chr3_87222309_87260556	0/1	g0001	51	1	10	29	4	6	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0002	41	1	6	24	2	8	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0003	31	0	9	21	0	1	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0004	18	4	2	11	1	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0005	15	0	0	15	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0006	12	10	2	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0007	12	1	6	0	0	5	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0008	11	0	0	11	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0009	10	0	0	9	0	1	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0010	8	8	0	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0011	8	0	0	8	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0012	7	0	0	7	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0013	5	0	4	1	0	0	CHMP2B	chr3	87222309	87260556