JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHMP2B_chr3_87222309_87260556	0/0	g0114	1	0	0	0	0	1	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0115	1	0	0	1	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0116	1	0	1	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0117	1	1	0	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0118	1	0	1	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0119	1	1	0	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0120	1	1	0	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0121	1	1	0	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0122	1	0	1	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0123	1	1	0	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0124	1	1	0	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0125	1	1	0	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0126	1	1	0	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0127	1	0	0	1	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0128	1	1	0	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0129	1	0	0	0	1	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0130	1	0	0	0	0	1	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0131	1	0	0	1	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0132	1	0	1	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0133	1	0	1	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0134	1	0	0	0	0	1	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0135	1	0	0	1	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0136	1	0	0	0	0	1	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0137	1	0	0	1	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0138	1	0	1	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0139	1	0	0	0	0	1	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0140	1	0	0	1	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0141	1	0	0	0	0	1	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0142	1	0	1	0	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0143	1	0	0	0	0	1	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0144	1	0	0	0	1	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0145	1	0	0	1	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0146	1	0	0	1	0	0	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	g0147	1	0	0	1	0	0	CHMP2B	chr3	87222309	87260556
CHMP3_chr2_86498430_86568443	0/0	g0001	3	0	0	3	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0002	3	0	1	2	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0003	3	0	0	2	0	1	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0004	3	3	0	0	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0005	2	0	0	2	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0006	2	0	0	2	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0007	2	0	0	2	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0008	2	2	0	0	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0009	2	0	2	0	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0010	2	0	1	1	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/1	g0011	2	0	1	0	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0012	2	0	0	2	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0013	2	2	0	0	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0014	2	2	0	0	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0015	2	0	0	2	0	0	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	g0016	2	1	0	0	1	0	CHMP3	chr2	86498430	86568443