JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHMP4B_chr20_33806348_33859366	0/0	g0190	1	0	1	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0191	1	1	0	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0192	1	1	0	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0193	1	1	0	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0194	1	1	0	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0195	1	1	0	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0196	1	1	0	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0197	1	1	0	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0198	1	0	1	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0199	1	1	0	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0200	1	0	0	0	0	1	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0201	1	0	0	1	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0202	1	1	0	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0203	1	1	0	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0204	1	0	1	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0205	1	0	1	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0206	1	1	0	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	g0207	1	0	1	0	0	0	CHMP4B	chr20	33806348	33859366
CHMP4C_chr8_81727448_81764515	0/0	g0001	22	7	4	6	0	5	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0002	8	3	0	3	1	1	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0003	7	0	0	6	0	1	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0004	6	0	1	2	1	2	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0005	5	5	0	0	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0006	5	0	1	4	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0007	5	0	0	5	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0008	5	0	0	5	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0009	4	3	1	0	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0010	4	4	0	0	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0011	4	3	1	0	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0012	4	1	0	2	0	1	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0013	4	1	0	3	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0014	4	0	0	4	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0015	4	0	0	4	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0016	4	1	1	2	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0017	3	0	3	0	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0018	3	0	3	0	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0019	3	0	0	3	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0020	3	0	0	3	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0021	3	0	0	3	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0022	3	0	0	3	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0023	3	0	0	0	2	1	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0024	3	0	1	0	1	1	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0025	2	1	1	0	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0026	2	0	2	0	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0027	2	2	0	0	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0028	2	0	0	2	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0029	2	0	0	2	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0030	2	0	0	2	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0031	2	2	0	0	0	0	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	g0032	2	0	0	2	0	0	CHMP4C	chr8	81727448	81764515