JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHMP5_chr9_33260049_33287070	0/0	g0108	1	0	0	1	0	0	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	g0109	1	0	0	1	0	0	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	g0110	1	0	0	1	0	0	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	g0111	1	1	0	0	0	0	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	g0112	1	1	0	0	0	0	CHMP5	chr9	33260049	33287070
CHMP6_chr17_80986841_81005133	0/1	g0001	99	7	26	47	3	15	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0002	42	3	11	22	1	5	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0003	41	3	3	29	2	4	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0004	36	4	8	19	5	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0005	23	22	0	0	0	1	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0006	18	0	0	18	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0007	12	0	0	12	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0008	11	0	6	4	0	1	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0009	7	0	1	3	2	1	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0010	6	5	1	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0011	6	0	0	6	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0012	6	0	5	0	1	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0013	5	5	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0014	5	0	0	5	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0015	5	5	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0016	4	0	0	4	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0017	4	0	2	0	1	1	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0018	4	3	1	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0019	4	4	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0020	4	0	0	4	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0021	4	2	2	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0022	3	0	0	3	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0023	3	3	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0024	3	1	1	0	1	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0025	3	0	0	2	0	1	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0026	2	2	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0027	2	0	1	0	0	1	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0028	2	0	2	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0029	2	2	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0030	2	0	0	0	0	2	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0031	2	0	0	0	1	1	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0032	2	0	0	0	0	2	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0033	2	0	0	2	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0034	2	2	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0035	1	0	0	1	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0036	1	0	0	1	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0037	1	0	1	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0038	1	0	0	1	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0039	1	0	1	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0040	1	1	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0041	1	1	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0042	1	1	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0043	1	1	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0044	1	1	0	0	0	0	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	g0045	1	1	0	0	0	0	CHMP6	chr17	80986841	81005133