JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHORDC1_chr11_90195429_90228049	0/0	g0157	1	1	0	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0158	1	1	0	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0159	1	0	0	1	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0160	1	0	0	1	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0161	1	0	1	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0162	1	1	0	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0163	1	0	0	1	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0164	1	0	0	1	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0165	1	1	0	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0166	1	1	0	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0167	1	0	0	0	0	1	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0168	1	0	1	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0169	1	0	0	0	0	1	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0170	1	1	0	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0171	1	0	1	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0172	1	0	0	0	0	1	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0173	1	0	0	0	1	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0174	1	1	0	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0175	1	0	0	0	0	1	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0176	1	0	0	0	0	1	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0177	1	0	1	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0178	1	0	1	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0179	1	0	1	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0180	1	0	1	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0181	1	1	0	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0182	1	0	1	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0183	1	0	1	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0184	1	1	0	0	0	0	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	g0185	1	0	1	0	0	0	CHORDC1	chr11	90195429	90228049
CHP1_chr15_41226268_41286887	0/0	g0001	3	0	0	2	0	1	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0002	3	0	0	3	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0003	2	0	0	0	2	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0004	2	0	1	1	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0005	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0006	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0007	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0008	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0009	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0010	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0011	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0012	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0013	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0014	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0015	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0016	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0017	1	0	0	0	1	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0018	1	0	1	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0019	1	0	1	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0020	1	0	0	0	0	1	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0021	1	0	0	0	0	1	CHP1	chr15	41226268	41286887