JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHP1_chr15_41226268_41286887	0/0	g0272	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0273	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0274	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0275	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0276	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0277	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0278	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0279	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0280	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0281	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0282	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0283	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0284	1	0	0	0	0	1	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0285	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0286	1	0	1	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0287	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0288	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0289	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0290	1	0	1	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0291	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	g0292	1	1	0	0	0	0	CHP1	chr15	41226268	41286887
CHP2_chr16_23750026_23763935	0/0	g0001	144	6	18	95	7	18	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	1/0	g0002	98	38	36	13	5	5	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/1	g0003	67	4	14	31	2	15	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0004	24	11	5	3	2	3	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0005	16	14	2	0	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0006	6	0	0	6	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0007	5	0	2	0	2	1	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0008	5	5	0	0	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0009	4	4	0	0	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0010	4	0	4	0	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0011	3	3	0	0	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0012	3	2	1	0	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0013	2	2	0	0	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0014	2	0	0	2	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0015	1	1	0	0	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0016	1	1	0	0	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0017	1	0	0	0	0	1	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0018	1	0	0	1	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0019	1	0	0	0	0	1	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0020	1	1	0	0	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0021	1	1	0	0	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0022	1	0	0	1	0	0	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	g0023	1	1	0	0	0	0	CHP2	chr16	23750026	23763935
CHPF2_chr7_151227483_151243822	0/0	g0001	151	32	29	73	2	15	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	1/0	g0002	92	17	16	30	5	23	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0003	61	18	11	29	2	1	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0004	19	3	6	7	2	1	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/1	g0005	19	1	7	0	5	5	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0006	8	8	0	0	0	0	CHPF2	chr7	151227483	151243822