JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHPF2_chr7_151227483_151243822	0/0	g0007	7	7	0	0	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0008	6	5	1	0	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0009	4	0	0	4	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0010	2	0	0	2	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0011	2	0	0	2	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0012	2	2	0	0	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0013	1	0	0	0	0	1	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0014	1	0	0	1	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0015	1	0	1	0	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0016	1	0	0	1	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0017	1	0	0	1	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0018	1	1	0	0	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0019	1	0	1	0	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0020	1	1	0	0	0	0	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	g0021	1	1	0	0	0	0	CHPF2	chr7	151227483	151243822
CHPF_chr2_219533954_219548809	0/1	g0001	152	19	26	76	7	23	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0002	53	1	19	27	4	2	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0003	52	12	13	16	3	8	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0004	26	26	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0005	19	0	6	13	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0006	18	0	2	16	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	1/0	g0007	9	7	1	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0008	7	0	2	5	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0009	4	4	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0010	4	4	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0011	3	3	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0012	3	0	0	0	0	3	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0013	2	2	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0014	2	1	1	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0015	2	0	2	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0016	2	0	0	2	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0017	2	0	0	2	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0018	2	2	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0019	2	2	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0020	2	2	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0021	2	2	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0022	1	0	1	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0023	1	1	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0024	1	0	0	0	0	1	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0025	1	0	0	1	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0026	1	0	0	1	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0027	1	0	0	1	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0028	1	0	0	0	0	1	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0029	1	0	0	1	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0030	1	1	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0031	1	0	0	1	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0032	1	1	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0033	1	1	0	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0034	1	0	1	0	0	0	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	g0035	1	1	0	0	0	0	CHPF	chr2	219533954	219548809