JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHPT1_chr12_101692640_101734074	0/0	g0237	1	1	0	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0238	1	0	0	0	1	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0239	1	1	0	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0240	1	0	0	1	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0241	1	0	0	0	0	1	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0242	1	0	1	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0243	1	0	0	1	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0244	1	1	0	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0245	1	0	1	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0246	1	0	1	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0247	1	0	1	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0248	1	0	0	1	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0249	1	1	0	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0250	1	0	0	1	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0251	1	0	0	1	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0252	1	0	0	1	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0253	1	1	0	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0254	1	1	0	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0255	1	1	0	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0256	1	1	0	0	0	0	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	g0257	1	1	0	0	0	0	CHPT1	chr12	101692640	101734074
CHRAC1_chr8_140506322_140522154	1/1	g0001	235	23	45	131	11	23	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0002	19	3	2	10	2	2	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0003	18	0	4	13	1	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0004	16	5	2	2	1	6	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0005	13	2	1	8	0	2	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0006	13	0	5	1	0	7	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0007	11	1	4	3	1	2	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0008	8	6	2	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0009	7	7	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0010	7	7	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0011	7	7	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0012	7	7	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0013	6	5	1	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0014	5	0	4	0	0	1	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0015	4	0	1	2	0	1	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0016	4	4	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0017	4	4	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0018	4	0	0	4	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0019	4	0	0	4	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0020	3	0	0	3	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0021	2	2	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0022	2	2	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0023	2	2	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0024	2	0	0	0	0	2	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0025	2	0	2	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0026	1	1	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0027	1	1	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0028	1	1	0	0	0	0	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	g0029	1	1	0	0	0	0	CHRAC1	chr8	140506322	140522154