JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHRM3_chr1_239381568_239920450	0/0	g0086	1	0	0	1	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0087	1	0	1	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0088	1	0	0	1	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0089	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0090	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0091	1	0	1	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0092	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0093	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0094	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0095	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0096	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0097	1	0	1	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0098	1	0	0	0	0	1	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0099	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0100	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0101	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0102	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0103	1	0	0	0	0	1	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0104	1	0	0	0	0	1	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0105	1	0	0	1	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0106	1	0	0	1	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0107	1	0	1	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0108	1	0	0	0	0	1	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0109	1	0	0	0	1	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0110	1	0	0	1	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0111	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0112	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0113	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0114	1	1	0	0	0	0	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0115	1	0	0	0	0	1	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	g0116	1	0	0	1	0	0	CHRM3	chr1	239381568	239920450
CHRM4_chr11_46378789_46396776	1/0	g0001	148	18	28	75	6	20	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0002	28	6	9	7	1	5	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0003	24	22	2	0	0	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0004	18	17	1	0	0	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0005	18	0	0	16	0	2	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0006	13	13	0	0	0	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0007	6	0	5	0	1	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0008	6	1	1	0	0	4	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0009	5	5	0	0	0	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0010	3	0	3	0	0	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0011	3	0	2	0	1	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0012	2	2	0	0	0	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0013	2	0	0	0	0	2	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/1	g0014	2	1	0	0	0	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0015	2	2	0	0	0	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0016	2	0	2	0	0	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0017	1	0	0	1	0	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0018	1	0	0	1	0	0	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	g0019	1	0	0	1	0	0	CHRM4	chr11	46378789	46396776