JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHRM5_chr15_33963497_34072458	0/0	g0328	1	0	0	1	0	0	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	g0329	1	0	0	1	0	0	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	g0330	1	0	0	1	0	0	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	g0331	1	0	0	1	0	0	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	g0332	1	0	0	1	0	0	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	g0333	1	0	0	1	0	0	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	g0334	1	1	0	0	0	0	CHRM5	chr15	33963497	34072458
CHRNA10_chr11_3660587_3676384	1/0	g0001	83	12	7	52	5	6	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/1	g0002	66	2	28	23	2	10	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0003	54	5	2	42	1	4	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0004	33	5	14	2	4	8	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0005	27	4	3	17	1	2	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0006	27	3	3	15	1	5	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0007	12	0	0	12	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0008	11	10	0	0	0	1	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0009	7	5	2	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0010	6	0	0	6	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0011	6	6	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0012	5	5	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0013	5	1	1	1	0	2	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0014	5	0	0	5	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0015	4	4	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0016	3	3	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0017	3	2	1	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0018	3	3	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0019	3	0	3	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0020	3	0	0	0	2	1	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0021	3	0	0	3	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0022	3	0	0	3	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0023	3	2	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0024	3	3	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0025	2	1	1	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0026	2	2	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0027	2	1	1	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0028	2	0	0	2	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0029	2	2	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0030	2	0	0	2	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0031	2	2	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0032	2	0	0	0	0	2	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0033	2	0	0	0	2	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0034	2	0	0	0	0	2	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0035	2	0	0	2	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0036	2	0	0	2	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0037	2	0	0	2	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0038	1	0	1	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0039	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0040	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0041	1	0	0	0	0	1	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0042	1	0	1	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0043	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384