JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHRNA10_chr11_3660587_3676384	0/0	g0044	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0045	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0046	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0047	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0048	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0049	1	0	0	0	0	1	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0050	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0051	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0052	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0053	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0054	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0055	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0056	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0057	1	0	0	0	0	1	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0058	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0059	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0060	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0061	1	0	1	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0062	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0063	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0064	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0065	1	0	0	0	0	1	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0066	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0067	1	0	0	0	0	1	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0068	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0069	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0070	1	0	1	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0071	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0072	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0073	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0074	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0075	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0076	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0077	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0078	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0079	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0080	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0081	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0082	1	1	0	0	0	0	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	g0083	1	0	0	1	0	0	CHRNA10	chr11	3660587	3676384
CHRNA1_chr2_174742592_174769472	0/1	g0001	59	0	11	33	6	8	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0002	41	1	9	23	2	6	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0003	13	0	2	10	0	1	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0004	9	0	1	7	0	1	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0005	9	1	3	0	2	3	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0006	6	0	0	6	0	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0007	6	0	3	0	1	2	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0008	5	5	0	0	0	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0009	5	0	0	5	0	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0010	5	1	1	2	0	1	CHRNA1	chr2	174742592	174769472