JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHRNA1_chr2_174742592_174769472	0/0	g0161	1	0	1	0	0	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0162	1	0	0	0	1	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0163	1	0	0	1	0	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0164	1	0	0	1	0	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0165	1	0	0	1	0	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0166	1	0	0	0	0	1	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0167	1	0	1	0	0	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0168	1	1	0	0	0	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0169	1	1	0	0	0	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0170	1	1	0	0	0	0	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	g0171	1	1	0	0	0	0	CHRNA1	chr2	174742592	174769472
CHRNA2_chr8_27454756_27484261	0/0	g0001	20	1	1	16	0	2	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0002	13	0	5	1	0	7	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0003	12	0	0	12	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0004	11	0	0	8	2	1	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0005	9	0	0	9	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0006	8	0	4	4	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0007	7	0	5	0	1	1	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0008	7	0	1	6	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0009	6	1	2	3	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0010	6	6	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0011	6	0	0	6	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0012	5	5	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0013	4	0	0	4	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0014	4	0	0	3	1	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0015	4	0	0	4	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0016	4	0	1	3	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0017	4	1	0	3	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0018	4	0	0	4	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0019	4	1	3	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0020	4	0	0	4	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0021	4	0	0	3	0	1	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0022	4	4	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0023	4	4	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0024	3	0	3	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0025	3	0	0	0	1	2	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0026	3	0	0	3	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0027	3	0	0	1	0	2	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0028	3	2	1	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0029	2	0	0	0	0	2	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0030	2	0	2	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0031	2	0	2	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0032	2	2	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0033	2	2	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0034	2	0	0	0	2	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0035	2	0	2	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0036	2	0	2	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0037	2	0	2	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	1/0	g0038	2	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0039	2	0	0	2	0	0	CHRNA2	chr8	27454756	27484261