JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHRNA2_chr8_27454756_27484261	0/0	g0240	1	0	0	0	0	1	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0241	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0242	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0243	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0244	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0245	1	0	1	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0246	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0247	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0248	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0249	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0250	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0251	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0252	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0253	1	0	1	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0254	1	0	1	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0255	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0256	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0257	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0258	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0259	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0260	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0261	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0262	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0263	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0264	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0265	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0266	1	0	0	0	1	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0267	1	0	0	0	1	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0268	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0269	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0270	1	0	0	1	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0271	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0272	1	0	1	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0273	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0274	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0275	1	0	1	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0276	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0277	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0278	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0279	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0280	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0281	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0282	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	g0283	1	1	0	0	0	0	CHRNA2	chr8	27454756	27484261
CHRNA3_chr15_78590309_78625996	0/0	g0001	20	2	7	3	2	6	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	g0002	12	4	3	0	2	3	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	g0003	11	1	1	9	0	0	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	g0004	7	3	1	3	0	0	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	g0005	5	0	0	5	0	0	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	g0006	4	4	0	0	0	0	CHRNA3	chr15	78590309	78625996