JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHRNA4_chr20_63338223_63366349	0/0	g0110	1	0	0	0	0	1	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0111	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0112	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0113	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0114	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0115	1	0	1	0	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0116	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0117	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0118	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0119	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0120	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0121	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0122	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0123	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0124	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0125	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0126	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0127	1	0	0	0	0	1	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0128	1	0	0	0	0	1	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0129	1	0	0	0	1	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0130	1	0	0	0	0	1	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0131	1	1	0	0	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0132	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0133	1	1	0	0	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0134	1	0	0	0	0	1	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0135	1	0	0	0	0	1	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0136	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0137	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0138	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0139	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0140	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0141	1	0	0	1	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0142	1	0	0	0	0	1	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0143	1	0	0	0	0	1	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0144	1	0	1	0	0	0	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	g0145	1	1	0	0	0	0	CHRNA4	chr20	63338223	63366349
CHRNA5_chr15_78560520_78600269	0/0	g0001	8	7	1	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0002	7	0	4	0	0	3	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0003	5	0	1	3	0	1	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0004	5	0	1	4	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0005	5	0	1	4	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0006	4	1	3	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0007	4	0	2	2	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0008	3	0	1	1	0	1	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0009	3	0	0	3	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0010	3	3	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0011	3	3	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0012	3	0	0	3	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0013	3	0	0	3	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0014	3	0	0	3	0	0	CHRNA5	chr15	78560520	78600269