JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHRNA5_chr15_78560520_78600269	0/0	g0265	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0266	1	0	1	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0267	1	1	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0268	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0269	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0270	1	0	0	0	0	1	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0271	1	0	1	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0272	1	0	0	0	1	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0273	1	0	0	0	0	1	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0274	1	1	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0275	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0276	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0277	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0278	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0279	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0280	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0281	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0282	1	0	1	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0283	1	0	1	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0284	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0285	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0286	1	0	1	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0287	1	0	1	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0288	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0289	1	0	1	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0290	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0291	1	0	1	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0292	1	0	1	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0293	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0294	1	1	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0295	1	1	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0296	1	1	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0297	1	1	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0298	1	1	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0299	1	1	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0300	1	1	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0301	1	1	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0302	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0303	1	1	0	0	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0304	1	0	0	0	0	1	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0305	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0306	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0307	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	g0308	1	0	0	1	0	0	CHRNA5	chr15	78560520	78600269
CHRNA6_chr8_42747620_42773786	1/0	g0001	41	2	4	25	2	7	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/1	g0002	33	1	14	10	1	6	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	g0003	32	17	3	12	0	0	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	g0004	17	0	0	17	0	0	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	g0005	13	6	6	0	1	0	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	g0006	12	0	1	11	0	0	CHRNA6	chr8	42747620	42773786