JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHRNA7_chr15_32025515_32178018	0/0	g0263	1	0	1	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0264	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0265	1	1	0	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0266	1	0	0	0	0	1	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0267	1	0	1	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0268	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0269	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0270	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0271	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0272	1	0	1	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0273	1	0	1	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0274	1	0	0	0	0	1	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0275	1	0	1	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0276	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0277	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0278	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0279	1	0	0	0	0	1	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0280	1	0	0	0	0	1	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0281	1	0	1	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0282	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0283	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0284	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0285	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0286	1	1	0	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0287	1	0	0	0	1	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0288	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0289	1	0	1	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0290	1	0	1	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0291	1	0	0	0	0	1	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0292	1	0	0	0	0	1	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0293	1	0	0	0	1	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0294	1	0	1	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0295	1	0	1	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0296	1	0	1	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0297	1	0	0	0	1	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/1	g0298	1	0	0	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0299	1	0	0	0	0	1	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0300	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0301	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0302	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0303	1	1	0	0	0	0	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	g0304	1	0	0	1	0	0	CHRNA7	chr15	32025515	32178018
CHRNA9_chr4_40330333_40360217	0/0	g0001	28	1	5	16	3	3	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	g0002	14	0	4	8	1	1	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	g0003	12	3	4	4	0	1	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	g0004	11	0	2	8	0	1	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/1	g0005	8	0	0	6	1	0	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	g0006	7	0	0	7	0	0	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	g0007	7	0	0	6	0	1	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	g0008	7	0	7	0	0	0	CHRNA9	chr4	40330333	40360217