JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHRND_chr2_232521160_232541664	0/0	g0111	1	0	0	1	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0112	1	1	0	0	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0113	1	0	0	1	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0114	1	0	0	1	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0115	1	0	0	1	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0116	1	1	0	0	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0117	1	0	0	1	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0118	1	0	1	0	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0119	1	1	0	0	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0120	1	0	0	0	0	1	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0121	1	0	0	1	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0122	1	0	0	1	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0123	1	0	0	1	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0124	1	0	0	1	0	0	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0125	1	0	0	0	0	1	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	g0126	1	0	0	1	0	0	CHRND	chr2	232521160	232541664
CHRNE_chr17_4892771_4908098	0/0	g0001	50	1	1	37	1	10	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0002	43	4	10	13	3	13	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0003	40	13	11	9	2	5	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0004	19	0	5	10	3	1	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0005	17	2	2	12	1	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0006	15	0	8	7	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0007	12	9	3	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0008	11	0	3	7	0	1	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0009	10	0	0	10	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0010	10	1	9	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0011	9	8	1	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0012	9	0	0	9	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0013	7	0	4	0	1	2	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0014	7	0	5	1	1	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0015	7	7	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0016	6	0	0	6	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0017	6	0	0	5	0	1	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0018	6	0	0	6	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0019	6	3	3	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0020	6	0	0	6	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0021	5	0	0	5	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0022	5	5	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0023	5	2	0	3	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0024	5	0	0	5	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0025	5	5	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0026	5	0	0	5	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0027	4	4	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0028	3	3	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0029	3	3	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0030	3	0	0	3	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0031	3	0	0	3	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0032	3	0	0	3	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0033	3	0	0	3	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0034	2	0	2	0	0	0	CHRNE	chr17	4892771	4908098