JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHRNE_chr17_4892771_4908098	0/0	g0085	1	0	0	0	0	1	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0086	1	0	0	0	0	1	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0087	1	0	0	0	1	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0088	1	0	1	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0089	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0090	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0091	1	0	1	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0092	1	0	1	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0093	1	0	0	1	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0094	1	0	1	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0095	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0096	1	0	0	1	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0097	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0098	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0099	1	0	0	1	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0100	1	0	0	1	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0101	1	0	0	1	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0102	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0103	1	0	0	1	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0104	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0105	1	0	0	1	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0106	1	0	0	1	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0107	1	0	1	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0108	1	0	0	1	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0109	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0110	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0111	1	0	0	1	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0112	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0113	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0114	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0115	1	0	1	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0116	1	0	1	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0117	1	1	0	0	0	0	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	g0118	1	0	0	1	0	0	CHRNE	chr17	4892771	4908098
CHRNG_chr2_232534692_232553115	0/0	g0001	62	2	20	25	3	12	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0002	47	0	4	36	4	3	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0003	27	0	1	25	0	1	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0004	26	0	1	24	0	1	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0005	25	19	2	0	0	4	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0006	22	4	4	6	0	8	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0007	21	6	10	5	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0008	17	8	3	3	0	3	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0009	16	3	5	3	1	4	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0010	11	0	0	9	0	2	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0011	8	4	1	1	2	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0012	7	0	2	3	1	1	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0013	6	0	0	5	0	1	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0014	6	0	0	5	1	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0015	6	1	1	3	0	1	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0016	5	0	0	4	1	0	CHRNG	chr2	232534692	232553115