JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHRNG_chr2_232534692_232553115	0/0	g0067	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0068	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0069	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0070	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0071	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0072	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0073	1	0	1	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0074	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0075	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0076	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0077	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0078	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0079	1	0	1	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0080	1	0	0	0	0	1	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0081	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0082	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0083	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0084	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0085	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0086	1	0	1	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0087	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0088	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0089	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0090	1	0	0	0	1	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0091	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0092	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0093	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0094	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0095	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0096	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0097	1	0	1	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0098	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0099	1	0	0	0	1	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0100	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0101	1	0	0	1	0	0	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	g0102	1	1	0	0	0	0	CHRNG	chr2	232534692	232553115
CHST10_chr2_100386860_100422668	0/1	g0001	28	0	6	17	1	3	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0002	22	0	5	14	1	2	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0003	17	5	4	5	0	3	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0004	12	12	0	0	0	0	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0005	11	6	0	0	0	5	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0006	10	0	8	0	2	0	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0007	9	0	9	0	0	0	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0008	9	0	0	9	0	0	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0009	7	0	7	0	0	0	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0010	6	0	0	6	0	0	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0011	5	0	0	5	0	0	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0012	5	0	0	5	0	0	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0013	5	0	0	4	0	1	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	g0014	5	0	0	5	0	0	CHST10	chr2	100386860	100422668