JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHST12_chr7_2398611_2453484	0/0	g0305	1	0	0	1	0	0	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	g0306	1	0	0	0	0	1	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	g0307	1	0	0	0	0	1	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	g0308	1	0	0	1	0	0	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	g0309	1	0	0	0	0	1	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	g0310	1	0	1	0	0	0	CHST12	chr7	2398611	2453484
CHST13_chr3_126519155_126548291	0/0	g0001	61	3	11	38	2	7	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/1	g0002	30	0	3	24	1	1	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0003	21	1	1	14	2	3	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0004	18	11	0	3	0	4	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0005	8	7	1	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0006	8	0	6	0	2	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0007	8	0	8	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0008	8	0	0	8	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0009	7	0	2	0	1	4	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0010	6	1	4	0	1	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0011	6	6	0	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0012	5	5	0	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0013	5	0	0	5	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0014	5	2	2	0	0	1	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0015	4	0	0	4	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0016	4	2	2	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0017	4	4	0	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0018	4	1	3	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0019	4	0	1	0	0	3	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0020	4	0	1	0	3	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0021	3	0	2	0	0	1	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0022	3	3	0	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0023	3	3	0	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0024	3	1	2	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0025	3	3	0	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0026	3	0	0	3	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0027	3	2	1	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0028	2	0	1	1	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0029	2	0	0	2	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0030	2	0	0	2	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0031	2	0	0	0	0	2	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0032	2	0	2	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0033	2	0	2	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0034	2	0	2	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0035	2	0	2	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0036	2	2	0	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0037	2	0	2	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0038	2	2	0	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0039	2	1	1	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0040	2	0	2	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0041	2	0	0	2	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0042	1	1	0	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0043	1	1	0	0	0	0	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	g0044	1	0	0	1	0	0	CHST13	chr3	126519155	126548291