JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHST15_chr10_124002668_124098598	0/0	g0358	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0359	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0360	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0361	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0362	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0363	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0364	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0365	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0366	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0367	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0368	1	1	0	0	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0369	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0370	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0371	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0372	1	0	0	1	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0373	1	1	0	0	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0374	1	0	1	0	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0375	1	1	0	0	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0376	1	1	0	0	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0377	1	1	0	0	0	0	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	g0378	1	1	0	0	0	0	CHST15	chr10	124002668	124098598
CHST1_chr11_45642689_45670622	0/0	g0001	87	9	18	48	6	6	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0002	54	7	11	22	3	11	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0003	44	0	5	37	0	2	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0004	9	0	7	2	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0005	8	7	1	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0006	6	0	0	6	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0007	5	5	0	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0008	4	0	2	0	1	1	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0009	4	4	0	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0010	4	4	0	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0011	4	3	1	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0012	4	4	0	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0013	4	4	0	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0014	4	4	0	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/1	g0015	3	0	0	0	2	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0016	3	3	0	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0017	3	3	0	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0018	3	1	1	0	0	1	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0019	3	0	3	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0020	3	0	0	3	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0021	3	0	0	3	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0022	3	0	0	3	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0023	2	0	0	2	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0024	2	0	0	2	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0025	2	0	2	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0026	2	2	0	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0027	2	1	1	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0028	2	2	0	0	0	0	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	g0029	2	2	0	0	0	0	CHST1	chr11	45642689	45670622