JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHST3_chr10_71959395_72018558	0/0	g0298	1	0	1	0	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0299	1	0	0	1	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0300	1	0	1	0	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	1/0	g0301	1	0	0	0	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0302	1	0	0	1	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0303	1	0	0	1	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0304	1	0	0	1	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0305	1	0	1	0	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0306	1	0	0	1	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0307	1	0	0	1	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0308	1	0	0	0	0	1	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0309	1	0	0	1	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0310	1	0	0	0	0	1	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0311	1	0	1	0	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0312	1	0	0	1	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0313	1	0	1	0	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0314	1	0	0	0	0	1	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0315	1	0	1	0	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0316	1	0	0	0	1	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0317	1	1	0	0	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0318	1	1	0	0	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0319	1	1	0	0	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0320	1	1	0	0	0	0	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	g0321	1	0	0	1	0	0	CHST3	chr10	71959395	72018558
CHST4_chr16_71521426_71543748	1/0	g0001	63	1	16	38	3	4	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0002	20	0	0	13	0	7	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0003	11	0	2	9	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0004	10	10	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0005	10	9	1	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0006	9	0	3	6	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0007	9	0	7	0	0	2	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0008	8	0	2	6	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0009	7	0	0	7	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0010	7	0	0	6	0	1	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0011	7	1	2	2	1	1	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0012	6	0	1	5	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0013	6	4	1	0	1	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0014	6	6	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0015	5	0	0	4	0	1	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/1	g0016	5	0	3	0	0	1	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0017	5	5	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0018	4	0	1	3	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0019	4	0	0	4	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0020	4	4	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0021	4	0	0	0	0	4	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0022	3	3	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0023	3	0	0	3	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0024	3	3	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0025	3	0	0	1	1	1	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0026	3	3	0	0	0	0	CHST4	chr16	71521426	71543748