JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHST4_chr16_71521426_71543748	0/0	g0177	1	0	1	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0178	1	1	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0179	1	1	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0180	1	1	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0181	1	1	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0182	1	1	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0183	1	1	0	0	0	0	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	g0184	1	0	0	0	0	1	CHST4	chr16	71521426	71543748
CHST5_chr16_75523530_75541108	0/0	g0001	92	1	21	62	0	8	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	1/0	g0002	57	11	21	4	7	13	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0003	34	5	6	17	1	5	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0004	20	2	3	12	2	1	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0005	11	7	0	4	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0006	8	1	1	4	0	2	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0007	7	6	1	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0008	7	0	4	0	1	2	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0009	6	0	1	3	0	2	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0010	5	0	1	4	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0011	5	3	2	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0012	5	5	0	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0013	5	1	2	0	1	1	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0014	4	0	0	4	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0015	4	0	0	4	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0016	4	1	0	3	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0017	3	3	0	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0018	3	0	1	2	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0019	3	0	0	3	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0020	3	3	0	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0021	3	0	1	2	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0022	2	2	0	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0023	2	0	2	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0024	2	1	0	0	1	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0025	2	2	0	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0026	2	2	0	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0027	2	2	0	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0028	2	2	0	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0029	2	0	0	0	2	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0030	2	1	0	1	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0031	2	2	0	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0032	2	0	0	2	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0033	2	2	0	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0034	1	0	0	1	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0035	1	1	0	0	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0036	1	0	0	0	0	1	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0037	1	0	0	1	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0038	1	0	0	1	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0039	1	0	0	1	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0040	1	0	0	0	0	1	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0041	1	0	0	1	0	0	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	g0042	1	0	0	1	0	0	CHST5	chr16	75523530	75541108