JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHTF8_chr16_69113010_69137588	0/0	g0172	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0173	1	0	1	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0174	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0175	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0176	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0177	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0178	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0179	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0180	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0181	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0182	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0183	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0184	1	0	0	0	0	1	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0185	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0186	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0187	1	0	0	0	0	1	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0188	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0189	1	0	0	0	0	1	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0190	1	0	1	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0191	1	0	0	1	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0192	1	0	0	1	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0193	1	0	0	1	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0194	1	0	0	1	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0195	1	0	0	1	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0196	1	0	1	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0197	1	0	0	1	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0198	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0199	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0200	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0201	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0202	1	0	1	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0203	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0204	1	1	0	0	0	0	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	g0205	1	0	0	1	0	0	CHTF8	chr16	69113010	69137588
CHTOP_chr1_153629066_153651306	0/0	g0001	101	3	22	62	3	11	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0002	43	6	12	20	0	5	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0003	23	1	2	15	1	4	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0004	20	12	3	0	1	4	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0005	12	0	0	12	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	1/1	g0006	11	1	1	0	3	4	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0007	11	0	4	7	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0008	8	6	1	1	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0009	7	7	0	0	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0010	7	4	0	1	0	2	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0011	5	5	0	0	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0012	5	0	4	0	1	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0013	5	1	3	0	0	1	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0014	4	0	0	4	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0015	4	4	0	0	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0016	4	4	0	0	0	0	CHTOP	chr1	153629066	153651306