JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CHTOP_chr1_153629066_153651306	0/0	g0067	1	0	0	0	0	1	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0068	1	0	0	1	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0069	1	0	0	1	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0070	1	0	0	0	0	1	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0071	1	1	0	0	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0072	1	0	1	0	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0073	1	1	0	0	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0074	1	0	0	1	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0075	1	0	1	0	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0076	1	0	0	0	0	1	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0077	1	0	0	1	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0078	1	0	0	1	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0079	1	0	0	1	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0080	1	0	0	1	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0081	1	0	0	0	0	1	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0082	1	0	0	1	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0083	1	0	0	1	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0084	1	0	0	1	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0085	1	0	1	0	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0086	1	1	0	0	0	0	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	g0087	1	0	1	0	0	0	CHTOP	chr1	153629066	153651306
CHUK_chr10_100183300_100234596	0/0	g0001	21	1	1	15	0	4	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0002	8	7	1	0	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0003	8	0	4	4	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0004	7	0	0	7	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	1/0	g0005	6	4	1	0	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0006	6	0	0	6	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0007	6	1	0	5	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0008	5	0	2	3	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0009	4	0	0	4	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0010	4	0	0	4	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0011	4	0	0	4	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0012	4	0	0	0	1	3	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0013	4	0	4	0	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0014	4	0	0	4	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0015	3	0	0	3	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0016	3	0	0	3	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0017	3	0	0	3	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0018	3	0	0	3	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0019	3	0	0	3	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0020	2	2	0	0	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0021	2	0	0	0	2	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0022	2	0	0	1	0	1	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0023	2	0	0	2	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0024	2	2	0	0	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0025	2	0	0	2	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0026	2	0	2	0	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0027	2	0	0	2	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0028	2	2	0	0	0	0	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	g0029	2	2	0	0	0	0	CHUK	chr10	100183300	100234596