JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIAO3_chr16_724765_745997	0/0	g0101	1	0	1	0	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0102	1	0	0	0	0	1	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0103	1	0	0	0	1	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0104	1	0	0	0	0	1	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0105	1	1	0	0	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0106	1	1	0	0	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0107	1	0	0	0	1	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0108	1	0	0	1	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0109	1	0	0	1	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0110	1	0	1	0	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0111	1	0	1	0	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0112	1	0	0	1	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0113	1	0	1	0	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0114	1	1	0	0	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0115	1	1	0	0	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0116	1	0	1	0	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0117	1	0	0	1	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	g0118	1	1	0	0	0	0	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/1	g0119	1	0	0	0	0	0	CIAO3	chr16	724765	745997
CIAPIN1_chr16_57423187_57452385	0/0	g0001	28	0	7	16	1	4	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0002	17	2	4	8	1	2	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0003	12	0	4	5	0	3	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0004	11	10	0	0	1	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/1	g0005	9	0	0	6	0	2	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0006	9	0	3	4	0	2	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0007	8	0	0	8	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0008	7	0	0	7	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0009	6	0	1	5	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0010	6	0	3	3	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0011	6	0	0	4	0	2	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0012	5	1	0	3	0	1	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0013	5	1	1	3	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0014	5	0	1	4	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0015	5	5	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0016	5	5	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0017	4	0	2	2	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0018	4	0	0	4	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0019	4	0	0	4	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0020	4	0	0	2	0	2	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0021	4	4	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0022	3	3	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0023	3	3	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0024	3	0	1	0	0	2	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0025	3	0	0	3	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0026	3	3	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0027	3	3	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0028	3	0	2	0	1	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0029	3	0	0	3	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0030	2	2	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0031	2	0	0	2	0	0	CIAPIN1	chr16	57423187	57452385