JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIAPIN1_chr16_57423187_57452385	0/0	g0182	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0183	1	0	1	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0184	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0185	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0186	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0187	1	0	0	1	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0188	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0189	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0190	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0191	1	0	0	0	0	1	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0192	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0193	1	0	0	1	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0194	1	0	0	1	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0195	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0196	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0197	1	0	0	0	0	1	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0198	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0199	1	0	1	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0200	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0201	1	0	0	0	0	1	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0202	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0203	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0204	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	g0205	1	1	0	0	0	0	CIAPIN1	chr16	57423187	57452385
CIART_chr1_150277554_150292093	0/0	g0001	163	22	24	92	4	21	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0002	55	2	8	31	6	8	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0003	39	10	7	22	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0004	21	0	2	10	0	9	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0005	14	14	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0006	12	0	6	0	3	3	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0007	9	1	3	1	2	2	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0008	8	0	0	8	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0009	7	0	0	7	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0010	7	0	0	7	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0011	7	7	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0012	6	4	0	1	0	1	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0013	6	6	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0014	5	0	5	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0015	4	4	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0016	4	0	3	0	0	1	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0017	4	4	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0018	3	1	0	1	1	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0019	3	3	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0020	3	0	3	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0021	3	0	0	3	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0022	3	0	2	1	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0023	3	3	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0024	2	2	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0025	2	0	2	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0026	2	0	0	1	0	1	CIART	chr1	150277554	150292093