JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIART_chr1_150277554_150292093	0/0	g0027	2	0	0	2	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	1/0	g0028	2	0	0	1	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0029	1	1	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0030	1	1	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0031	1	1	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0032	1	1	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0033	1	1	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0034	1	1	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/1	g0035	1	0	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0036	1	0	0	1	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0037	1	1	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0038	1	0	1	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0039	1	1	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0040	1	0	1	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0041	1	0	1	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0042	1	1	0	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0043	1	0	0	1	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0044	1	0	1	0	0	0	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	g0045	1	0	1	0	0	0	CIART	chr1	150277554	150292093
CIB1_chr15_90224975_90238941	0/0	g0001	107	3	23	62	4	15	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	1/1	g0002	73	2	10	48	2	9	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0003	65	8	19	27	4	7	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0004	56	13	3	39	0	1	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0005	31	0	7	23	0	1	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0006	24	11	10	0	2	1	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0007	9	9	0	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0008	7	7	0	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0009	6	5	1	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0010	6	6	0	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0011	5	4	1	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0012	4	4	0	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0013	4	0	2	2	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0014	4	0	0	4	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0015	4	0	2	2	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0016	3	0	1	0	0	2	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0017	3	3	0	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0018	3	0	2	0	0	1	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0019	2	0	0	2	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0020	2	2	0	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0021	2	0	0	2	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0022	2	0	0	2	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0023	2	2	0	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0024	2	2	0	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0025	2	0	0	0	2	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0026	1	1	0	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0027	1	0	1	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0028	1	0	0	1	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0029	1	0	0	1	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0030	1	1	0	0	0	0	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	g0031	1	0	1	0	0	0	CIB1	chr15	90224975	90238941