JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIB2_chr15_78099606_78136445	0/0	g0275	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0276	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0277	1	1	0	0	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0278	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0279	1	0	0	0	0	1	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0280	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0281	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0282	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0283	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0284	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0285	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0286	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0287	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0288	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0289	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0290	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0291	1	0	1	0	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0292	1	0	1	0	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0293	1	0	0	0	1	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0294	1	0	1	0	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0295	1	1	0	0	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0296	1	1	0	0	0	0	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	g0297	1	0	0	1	0	0	CIB2	chr15	78099606	78136445
CIB3_chr19_16156368_16178525	0/0	g0001	45	1	15	19	4	6	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0002	19	0	3	16	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0003	12	0	6	6	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0004	11	0	0	10	0	1	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0005	8	1	3	2	0	2	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0006	7	1	3	0	2	1	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0007	7	6	1	0	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0008	5	0	2	3	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0009	5	0	0	5	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0010	5	1	1	0	2	1	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	1/0	g0011	5	0	0	3	0	1	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0012	4	4	0	0	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0013	3	0	2	1	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0014	3	0	1	2	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0015	3	3	0	0	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0016	3	1	1	0	1	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0017	3	0	2	0	0	1	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0018	3	3	0	0	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0019	3	1	2	0	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0020	3	3	0	0	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0021	3	0	1	2	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0022	3	3	0	0	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0023	3	0	1	0	0	2	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0024	3	0	0	2	0	1	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0025	3	0	0	3	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0026	2	0	0	2	0	0	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	g0027	2	0	2	0	0	0	CIB3	chr19	16156368	16178525