JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIB4_chr2_26576205_26646366	0/0	g0323	1	1	0	0	0	0	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	g0324	1	1	0	0	0	0	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	g0325	1	0	0	1	0	0	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	g0326	1	0	0	1	0	0	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	g0327	1	0	0	1	0	0	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	g0328	1	0	0	1	0	0	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	g0329	1	0	0	1	0	0	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	g0330	1	0	0	1	0	0	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	g0331	1	1	0	0	0	0	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	g0332	1	1	0	0	0	0	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	g0333	1	0	0	1	0	0	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	g0334	1	1	0	0	0	0	CIB4	chr2	26576205	26646366
CIBAR1_chr8_93695550_93736527	0/0	g0001	30	0	3	27	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0002	25	2	8	11	1	3	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0003	24	7	3	9	2	3	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0004	21	0	3	13	0	5	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0005	17	12	2	0	1	2	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0006	11	1	4	6	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0007	10	3	5	0	1	1	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0008	7	0	0	7	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0009	6	0	5	0	1	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0010	6	0	4	1	1	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0011	6	6	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0012	5	0	0	5	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0013	5	0	5	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0014	5	0	0	5	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0015	5	5	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0016	5	5	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0017	4	0	2	0	0	2	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0018	4	0	0	4	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0019	4	0	0	4	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0020	3	0	0	0	2	1	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0021	3	3	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0022	3	0	0	3	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0023	3	0	0	3	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0024	3	2	1	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0025	2	0	0	2	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0026	2	0	0	2	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0027	2	0	0	2	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/1	g0028	2	0	0	0	1	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0029	2	0	2	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0030	2	0	0	2	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0031	2	0	1	0	1	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0032	2	2	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0033	2	2	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0034	2	0	0	0	0	2	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0035	2	0	2	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0036	2	2	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0037	2	0	0	0	0	2	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0038	2	0	2	0	0	0	CIBAR1	chr8	93695550	93736527